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8) Not a filter. It allows plotting the thickness of the fusion arcs in the visualization module according to either the coverage or the overall score.
9) It is possible to apply further and more stringent criteria to the alignment parameters of the reads mapping to the breakpoint junction (1.0 forces a perfect alignment) contributing to the Junction evidence Score threshold for intrachromosomal candidate fusions.
10) It is possible to apply further and more stringent criteria to the alignment parameters of the reads mapping to the breakpoint junction (1.0 forces a perfect alignment) contributing to the Junction evidence Score threshold for extrachromosomal candidate fusions.
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